PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.EC4LT
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 198aa    MW: 21813 Da    PI: 8.9987
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.EC4LTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.2e-1580170196
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f  vl++s+v +s+++  p k + ++   +  e    t+    g+sW++ ++    +gr ++ +GW++Fvkan L egD +vF+l+ +s+++ v+ v
  Araip.EC4LT  80 FHVVLSKSHVRRSCLMG-PSKDLIDIlP-SA-E--VPTVLKCGGESWDMVYR-GHAPGRKFFDGGWRKFVKANCLVEGDACVFELMANSDEKIVFEV 170
                  66788888999888555.8888877741.22.2..34777889********3.45566799*************************99888877765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.82E-1775174IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-1875174IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-1778174No hitNo description
PROSITE profilePS5086311.98479176IPR003340B3 DNA binding domain
SMARTSM010191.9E-980176IPR003340B3 DNA binding domain
PfamPF023621.1E-1380169IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
SLQQHRKHRE VVGGAFRKFW RVLPVDNVTP LPTASSMSSP GSSSTSRVSV EGQAPLPKPA  60
DPAANLSSNE IAPLSRNPFF HVVLSKSHVR RSCLMGPSKD LIDILPSAEV PTVLKCGGES  120
WDMVYRGHAP GRKFFDGGWR KFVKANCLVE GDACVFELMA NSDEKIVFEV QILRGDLPEV  180
FFKRDRIGAS EQKPIVID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016191585.11e-116PREDICTED: B3 domain-containing protein Os04g0386900-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.15e-11related to vernalization1 1